Notes d’application

C1-C10 PFAS Analysis in Human Plasma and Serum

Integrating Ultrashort-Chain Compounds into PFAS Biomonitoring

08 Oct 2025

feature CFAN4273

Abstract

Human exposure to ultrashort-chain (C1 to C3) PFAS and their potential adverse health effects are poorly understood, partly due to a lack of analytical methods to properly monitor their occurrence. This study introduces an innovative methodology for the simultaneous analysis of C1 to C10 carboxylic and sulfonic acid PFAS, along with four alternative compounds, in human plasma and serum samples. The chromatographic analysis was conducted using a polar-embedded, reversed-phase LC column for accurate and robust quantification.

Introduction

While concerns about the adverse effects of long-chain per- and polyfluoroalkyl substances (PFAS) on human health have led to increased biomonitoring, less is known about the potential toxicity of ultrashort-chain PFAS. Ultrashort-chain PFAS are ubiquitous in environmental aquatic systems and can occur at very high concentrations, so determining exposure levels is important, particularly for vulnerable populations. Since both human plasma and serum are widely used for biomonitoring longer-chain PFAS, developing methods that include shorter chain PFAS is critical to gaining a more comprehensive understanding of the relationship between PFAS exposure and adverse health outcomes.

Ultrashort-chain PFAS are small, highly polar compounds with carbon chain lengths shorter than C4 (Figure 1). Their high polarity creates a challenge for analytical practices that are based on reversed-phase liquid chromatography, primarily due to insufficient chromatographic retention. To improve analytical performance, the following method was developed on an Ultra IBD column because its polar-embedded stationary phase provides stronger retention of polar compounds, even in the presence of the various salts, electrolytes, and buffers that are inherently found in human plasma and serum.

In this study, a simple and reliable workflow was developed for the simultaneous analysis of C1 to C10 perfluoroalkyl carboxylic and sulfonic acids, along with four alternative PFAS, in human plasma and serum. The samples underwent a simple, single-step protein precipitation procedure and were analyzed with a user-friendly LC-MS/MS method. Method accuracy and precision were evaluated with fortified fetal bovine serum. In addition, the method’s suitability for real-world samples was confirmed by accurately measuring targeted PFAS with known concentrations in NIST standard reference human plasma (NIST SRM 1950) and serum (NIST SRM 1957).

Figure 1: Structures of C1 to C3 PFAS
figure article CFAN4273 01

Experimental

Plasma and Serum Samples

Since PFAS-free human plasma and serum were not found during the screening of commercially obtained samples, charcoal-stripped fetal bovine serum (FBS) obtained from MilliporeSigma (Burlington, MA) was used as the blank matrix for method verification because it did not contain any of the analytes of interest except for TFA. To compensate for this, a TFA isotope, 13C-TFA, was employed as a surrogate to assess method accuracy for TFA in FBS. NIST SRM 1950 (metabolites in human plasma) and NIST SRM 1957 (organic contaminants in non-fortified human serum) were purchased from NIST Store (Gaithersburg, MD). These SRMs are characterized by known concentrations of six or seven short-chain and long-chain PFAS.

Standard and Sample Preparation

TFA is commonly present in laboratory materials, such as pipette tips, glass and polypropylene HPLC vials, and polypropylene tubes. Following a comprehensive examination, the materials with the lowest TFA contamination levels were chosen for standard and sample preparation. Additionally, deionized water and reverse osmosis (RO) water generated at Restek were assessed to determine if they contained PFAS. The results revealed that RO water was free of PFAS contamination, with the exception of TFA, which was found to be present at very low levels. Consequently, RO water was used for the preparation of mobile phase and calibration standards.

The calibration standard solutions (100 µL) were prepared in RO water, supplemented with 1x phosphate-buffered saline (PBS), across a range of 0.05 to 40 ng/mL (ppb) in polypropylene HPLC vials. Initial testing revealed that early eluting compounds displayed slightly broader peak shapes in the human plasma and serum samples compared to the neat standard solutions prepared in 100% water. Therefore, PBS was incorporated into the standard solutions to mitigate this variability and ensure uniform chromatographic performance between standard and sample solutions.

Five isotopically labeled PFAS were used as quantitative internal standards (QIS) (Table I). A 5 µL aliquot of QIS working solution (40 ng/mL of 13C3-PFBA; 20 ng/mL of 13C2-PFHxA and 13C4-PFOA; and 10 ng/mL of 13C5-PFNA and 13C2-PFDA) was added to the standard solutions, which were then mixed with 200 µL of methanol containing 1.5% formic acid.

For the assessment of method accuracy and precision, 100 µL aliquots of FBS were fortified at 0.4, 2, 10, and 30 ppb with non-labeled PFAS and isotopically labeled 13C-TFA, which served as a surrogate for the determination of TFA recovery. The fortified FBS samples were mixed with 5 µL of QIS working solution and 2 µL of extracted internal standard (EIS) working solution (50 ng/mL of 13C3-PFPrA, 13C4-PFBA, 13C5-PFPeA, 13C5-PFHxA, 13C4-PFHpA, 13C8-PFOA, 13C9-PFNA, 13C6-PFDA, 13C3-PFHxS, and 13C8-PFOS). A 200 µL aliquot of methanol containing 1.5% formic acid was then added to the fortified FBS samples followed by vortexing for 30 seconds at 3000 rpm. After centrifugation at 4200 rpm for 10 minutes, approximately 150 µL of supernatant was transferred to a polypropylene vial insert (cat.# 24518), placed in a glass HPLC vial (cat.# 24626), and subsequently injected for LC-MS/MS analysis. This single-step protein precipitation in clean polypropylene HPLC vials was used to minimize background PFAS contamination and to ensure accurate measurement of target analytes. Non-fortified human plasma and serum samples were also prepared using the same procedure that was used for the fortified FBS samples.

Analytical System

PFAS analysis was performed by LC-MS/MS under the conditions shown below. A PFAS delay column was installed between the mixer and injector to prevent any potential PFAS contamination upstream of the injector from coeluting with PFAS in the samples.

System: Waters ACQUITY UPLC I-Class and Xevo TQ-S triple quadrupole mass spectrometer 

Columns:

  • Analytical column: Ultra IBD, 100 mm x 2.1 mm, 3 µm (cat.# 9175312)
  • PFAS delay column (cat.# 27854)

Injection volume: 5 µL

Mobile phase A: 5 mM ammonium formate, 0.1% formic acid in water

Mobile phase B: Acetonitrile

Flow rate: 0.3 mL/min

Temperature: 40 °C

Gradient:  

Time (min) %B
0.00 20
7.00 95
9.00 95
9.01 20
11.00 20

Ion mode: Negative ESI

Mode: Scheduled MRM

Results and Discussion

LC-MS/MS Method Development

After exploring various mobile phases and chromatographic conditions, a final method (Figure 2) was established for the analysis of C1 to C10 PFAS in human plasma and serum. The polar embedded Ultra IBD column provided strong retention and good separation of early eluting, ultrashort-chain PFAS analyzed under reversed-phase conditions. More important, the extensive retention of ultrashort-chain PFAS, especially for the first-eluted analyte (TFA), led to reduced matrix interferences. Matrix impact was further minimized by using stable isotopes as internal standards to correct for any matrix interference during quantification. The MS/MS transition parameters and internal standards used for each analyte are provided in Table I.

Figure 2: Analysis of a 10 ppb PFAS Standard 
Simultaneous Analysis of C1 to C10 PFAS and Alternative Compounds on Ultra IBD

LC_CF0812

Conditions

ColumnUltra IBD (cat.# 9175312)
Dimensions:100 mm x 2.1 mm ID
Particle Size:3 µm
Pore Size:100 Å
Temp.:40 °C
Standard/SamplePFAS 28 calibration standard (cat.# 30734)
Diluent:1:2 water:methanol
Conc.:10 ng/mL
Inj. Vol.:5 µL
Mobile Phase
A:Water, 5 mM ammonium formate, 0.1% formic acid
B:Acetonitrile
Time (min)Flow (mL/min)%A%B
0.000.38020
7.000.3595
9.000.3595
9.010.38020
11.000.38020
Max Pressure:275 bar
DetectorWaters Xevo TQ-S
Ion Mode:ESI-
Mode:MRM
InstrumentWaters ACQUITY UPLC I-Class
Sample PreparationThe standard solution (100 μL) was prepared in reverse osmosis water supplemented with 1x phosphate-buffered saline at 10 ng/mL (ppb) in a polypropylene HPLC vial followed by mixing with 200 μL of methanol containing 1.5% formic acid.
NotesA PFAS delay column (cat.# 27854) was installed before the injector. The peaks of confirmation ions are not displayed in this chromatogram.

Table I: MS Transitions and Analytes Retention Times 

CompoundsRetention Time (min)Precursor IonProduct Ions*Cone (V)Collision (V)Quantification Internal Standard
Target Analytes
TFA3.25113.03 [M-H]-69.01101013C3-PFBA
PFPrA4.81162.97 [M-H]-119.0210813C3-PFBA
PFBA5.80213.03 [M-H]-168.9814813C3-PFBA
PFPeA6.56262.97 [M-H]-218.972613C2-PFHxA
PFHxA7.13313.10 [M-H]-268.97/118.9928/2013C2-PFHxA
PFHpA7.62363.16 [M-H]-319.09/169.06810/1813C4-PFOA
PFOA8.10413.10 [M-H]-368.96/168.90210/1613C4-PFOA
PFNA8.62463.10 [M-H]-419.01/219.02410/1613C5-PFNA
PFDA9.29513.17 [M-H]-469.16/219.06412/1613C2-PFDA
TFMS4.37148.97 [M-H]-79.93/98.926218/1813C3-PFBA
PFEtS5.44198.90 [M-H]-79.92/98.913822/2213C3-PFBA
PFPrS6.08248.97 [M-H]-79.92/98.91224/2413C3-PFBA
PFBS6.55298.97 [M-H]-79.97/98.89226/2613C2-PFHxA
PFPeS6.93349.10 [M-H]-79.98/98.98632/3013C2-PFHxA
PFHxS7.24398.90 [M-H]-79.97/98.895632/3413C2-PFHxA
PFHpS7.56449.17 [M-H]-79.98/98.97442/3813C2-PFHxA
PFOS7.82499.03 [M-H]-79.92/98.90840/4013C4-PFOA
PFNS8.09549.10 [M-H]-79.92/98.831242/4013C4-PFOA
PFDS8.32599.17 [M-H]-79.98/98.83844/4613C5-PFNA
HFPO-DA7.01285.03 [M-COOH]-169.02/185.0226/1613C2-PFHxA
ADONA7.11376.90 [M-H]-250.93/84.972212/2613C2-PFHxA
9Cl-PF3ONS7.75530.78 [M-H]-350.85/82.961226/2413C2-PFHxA
11Cl-PF3OUdS8.15630.78 [M-H]-450.80/82.95826/3213C5-PFNA
Extracted Internal Standards
13C3-PFPrA4.81165.97 [M-H]-120.96101113C3-PFBA
13C4-PFBA5.80217.03 [M-H]-171.982813C3-PFBA
13C5-PFPeA6.56267.97 [M-H]-222.992613C2-PFHxA
13C5-PFHxA7.13318.03 [M-H]-272.932713C2-PFHxA
13C4-PFHpA7.62366.90 [M-H]-321.9321013C4-PFOA
13C8-PFOA8.10420.97 [M-H]-375.9421013C4-PFOA
13C9-PFNA8.62471.97 [M-H]-426.874813C5-PFNA
13C6-PFDA9.29518.90 [M-H]-473.8741313C2-PFDA
13C3-PFHxS7.24401.90 [M-H]-79.9723213C2-PFHxA
13C8-PFOS7.82506.84 [M-H]-79.9744813C4-PFOA
Quantitative Internal Standards
13C3-PFBA5.80215.97 [M-H]-171.97108 
13C2-PFHxA7.13314.97 [M-H]-269.9388 
13C4-PFOA8.10416.87 [M-H]-371.8828 
13C5-PFNA8.62467.87 [M-H]-422.891610 
13C2-PFDA9.29514.87 [M-H]-469.84810 

*Quantifier ion/qualifier ion. No qualifier ion was used for TFA, PFPrA, PFBA, and PFPeA because only one product ion could be identified for each.

Linearity

With quadratic regression (1/x weighted), all analytes showed acceptable linearities with r2 >0.995 and deviations <20%. Table II shows the specific linear range for each analyte, ranging from 0.05 ppb to 40 ppb, with variation occurring at the lowest calibration concentration.

Accuracy and Precision

Accuracy and precision for most analytes were assessed at 0.4, 2, and 10 ppb. However, for HFPO-DA and TFA, the evaluation was conducted at 2, 10, and 30 ppb because 0.4 ppb was below the linear range of these compounds. Three batches of samples were prepared and analyzed on different days, totaling nine replicates at each fortification level. The average recoveries and relative standard deviations (%RSD) are presented in Table II. All analytes exhibited recovery values within the range of 82.3–115% across the three fortification levels. Satisfactory method precision was demonstrated with %RSD values ranging from 0.965 to 11.3%. Additionally, the results indicated that all EIS had recovery values within 20% of the nominal concentration. The use of EIS as an additional quality control measure enhanced the reliability and robustness of the method.

Based on the results of the accuracy and precision experiments, the method LOQ was set as the lowest concentration of the standard calibration curve for each analyte. The method LOD was estimated from the analysis of fortified FBS and was defined by a peak signal-to-noise ratio of 3:1.

Measurement of C1–C10 and Alternative PFAS in NIST 1950 and 1957 SRMs

Six preparations of each SRM were analyzed with the developed LC-MS/MS method. The results indicated that all measured EIS concentrations fell within 20% of the nominal concentration. Moreover, Table III illustrates that the average experimental concentrations of most PFAS closely matched the reference concentrations, with deviations within 20%. Although the measured PFDA concentration in NIST SRM 1957 exhibited a slightly higher deviation of 26%, it remained within the deviation range of the reference concentration. These results demonstrated that the established method was suitable for accurate measurement of PFAS—including ultrashort-chain PFAS—in both human plasma and serum samples. In addition to the reference PFAS, other measurable PFAS were also reported in Table III.

Table II: Linearity, LOD, Accuracy, and Precision Results for Fortified Fetal Bovine Serum Samples

   Average Recovery (%RSD)
 Linearity RangeLODFortified Concentration (ng/mL)
Analytes(ng/mL)(ng/mL)0.421030
13C-TFA0.50 – 400.1250*90.6 (9.28)98.0 (2.99)100 (10.7)
PFPrA0.25 – 400.0102108 (2.53)115 (0.965)105 (6.99)
PFBA0.10 – 400.0222104 (5.57)109 (1.75)104 (1.51)
PFPeA0.10 – 400.012597.4 (3.25)93.3 (4.19)89.1 (5.57)
PFHxA0.10 – 400.009899.2 (2.46)109 (4.65)102 (6.31)
PFHpA0.10 – 400.005086.7 (5.37)99.2 (2.04)89.2 (1.80)
PFOA0.10 – 400.005194.8 (8.24)107 (5.30)95.6 (3.35)
PFNA0.10 – 400.001296.2 (1.44)111 (1.87)99.1 (2.62)
PFDA0.10 – 400.008393.6 (1.93)102 (2.03)95.5 (3.64)
TFMS0.05 – 400.007089.4 (7.33)88.8 (3.80)91.9 (3.19)
PFEtS0.05 – 400.002098.0 (2.62)103 (1.47)99.3 (2.26)
PFPrS0.05 – 400.003098.1 (8.18)108 (4.23)98.9 (4.15)
PFBS0.05 – 400.012488.0 (8.84)94.1 (4.95)86.5 (6.17)
PFPeS0.10 – 400.003194.8 (4.57)100 (8.05)94.3 (5.43)
PFHxS0.10 – 400.011585.8 (7.88)96.0 (10.0)92.2 (8.98)
PFHpS0.10 – 400.008892.5 (6.75)99.8 (6.45)93.4 (5.74)
PFOS0.10 – 400.020097.8 (8.66)97.9 (7.01)95.9 (3.37)
PFNS0.10 – 400.012992.1 (7.98)94.2 (4.43)91.9 (2.78)
PFDS0.10 – 400.011192.6 (8.20)82.3 (3.48)87.6 (3.55)
HFPO-DA0.50 – 400.187599.9 (11.3)91.1 (8.95)90.4 (6.13)
ADONA0.10 – 400.003590.4 (7.14)106 (4.67)95.7 (4.25)
9Cl-PF3ONS0.10 – 400.003195.8 (4.20)93.7 (5.12)93.8 (6.71)
11Cl-PF3OUdS0.10 – 400.0023106 (5.10)84.5 (4.20)97.2 (4.86)

*For non-labeled TFA

Table III: Quantification of PFAS in NIST 1950 and 1957 SRMs

AnalytesReferenceExperimental Avg.Experimental Precision (%RSD)Relative Concentration (%)**
 Conc. (ng/mL)Conc. (ng/mL)  
NIST SRM 1950
PFOA3.27 ± 0.063.123.7095.4
PFNA0.720 ± 0.0280.850.74117
PFDA0.322 ± 0.0070.303.4791.6
PFHxS3.25 ± 0.082.916.2689.5
PFOS10.64 ± 0.1312.572.92118
TFA5.744.45
PFPrA0.266.90
PFHpA0.233.04
TFMS0.083.95
PFPeS0.154.31
PFHpS0.364.90
PFDS0.104.64
NIST SRM 1957*
PFHpA0.305 ± 0.0510.282.1692.1
PFOA5.00 ± 0.444.211.9184.2
PFNA0.878 ± 0.0770.771.3887.9
PFDA0.39 ± 0.120.292.6974.4
PFHxS4.00 ± 0.833.359.8883.8
PFOS21.1 ± 1.320.463.8197.0
TFA3.223.79
TFMS0.070.10
PFPeS0.107.97
PFHpS0.486.20
PFDS0.104.23

*The reference concentration for NIST SRM 1957 is presented as mass fraction (µg/kg).

**Relative concentration = (experimental concentration/reference concentration) x 100

Future Directions

While the data reported here were generated using a standard, stainless-steel Ultra IBD column (cat.# 9175312), the same column (stationary phase and dimensions) is now available in an inert hardware format (Ultra Inert IBD, cat.# 9175312-T).  The hardware used to make the Ultra Inert IBD column is treated with an inert coating, which improves sensitivity by preventing unwanted analyte interactions with the stainless-steel surface.  As shown in Figure 3, the inert hardware results in a notable enhancement in detection sensitivity for most of the PFAS tested (3-70% increase in peak area and 5-75% increase in peak height) compared to columns made with uncoated hardware. Future applications of the method developed here may benefit from using an Ultra Inert IBD column, particularly for samples containing PFAS at trace levels.

Figure 3: Inert LC column hardware increased peak area and height for most PFAS compared to columns made with traditional stainless-steel hardware.
figure article CFAN4273 03

Conclusions

A simple, reliable workflow was established in this study to incorporate ultrashort-chain PFAS analysis into a method that also included longer-chain PFAS that are commonly monitored in human plasma and serum. The method utilized a polar-embedded Ultra IBD column to increase chromatographic retention of these small polar analytes, and the results demonstrated that the method was rugged, accurate, and precise. Most important, this method can offer a valuable tool for gaining insights into human exposure to these emergent ultrashort-chain PFAS. Visit www.restek.com/PFAS for additional products, methods, and technical resources.

Products Mentioned


Colonnes Ultra IBD, 3µm 100 x 2.1mm
Colonne HPLC Ultra Inert IBD, 3 µm, 100 x 2,1 mm
“Colonne-retard” PFAS HPLC, 5 µm, 50 x 2.1 mm
Flacon à visser à col large avec système Step et zone de marquage graduée, 2.0 ml, 12 x 32 mm, filetage 10 mm/425 (flacon seulement), verre transparent, lot de 100
Solution-étalon de calibration PFAS 28, 1 μg/ml de chaque composé dans le méthanol (1 mM KOH), 1 ml/ampoule
Insert réducteur de volume, polypropylène, col large avec ressort, 250 µl, lot de 100

Authors

  • Shun-Hsin Liang, PhD

    Shun-Hsin is a senior principal scientist in LC Solutions at Restek. He received his bachelor’s degree from the National Taiwan University in 1988 and obtained his PhD from Michigan State University in 1996. He performed postdoctoral research at the University of Michigan from 1996 to 2000 for oncology studies. In 2001, he was appointed as research faculty at The Pennsylvania State University and focused on molecular toxicology research. In 2006, he joined MPI Research Inc. as a senior research scientist and was a study director for GLP analytical projects. In 2013, Dr. Liang joined the LC Solutions department at Restek and specialized in developing application methods across the fields of environmental, food safety, and life sciences.

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  • Justin Steimling
CFAN4273
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